sci-libs

Bug Reports

• sci-libs/gedcom-parse - The GEDCOM parser library 0.90.0 (new package)

  84274 - Assigned to Default Assignee for New Packages
• sci-libs/itk - the National Library of Medicine Insight Segmentation and Registration Toolkit

  124241 - Assigned to Default Assignee for New Packages
• sci-libs/candystore, a post processor for CalculiX

  246611 - Assigned to Default Assignee for New Packages
• sci-libs/rsl-1.40.ebulid (new ebuild)

  277478 - Assigned to Default Assignee for New Packages
• sci-libs/libgis (new ebuild)

  290417 - Assigned to Default Assignee for New Packages
• sci-libs/vision-workbench-2.0_beta3 (New package)

  290626 - Assigned to Default Assignee for New Packages
• sci-libs/pg2plplot - Assist the transition from PGPlot to PLplot in Fortran programs

  450912 - Assigned to Default Assignee for New Packages
• sci-libs/versor - C++ library for Euclidean and Conformal Geometric Algebra

  522294 - Assigned to Default Assignee for New Packages
• sci-libs/teem - Scientific Raster Data Visualization Libraries

  529980 - Assigned to Default Assignee for New Packages
• >=sci-libs/cln-1.3.3[+doc]: !pdfTeX error: pdfetex (file /usr/share/texmf-dist/fonts/enc/dvips/cm-super/cm- super-t1.enc): invalid encoding vector (a name or `[' missing):

  551394 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/clrng - library for uniform random number generation in OpenCL.

  574864 - Assigned to Default Assignee for New Packages
• sci-libs/adolc-2.5.2 : /.../ampisupport.cpp:53:56: error: ‘ADTOOL_AMPI_push_CallCodeReserve’ was not declared in this scope

  586746 - Assigned to Gentoo Science Related Packages
• sci-libs/libsvm-3.17-r3: add octave support

  591354 - Assigned to Gentoo Science Related Packages
• sci-libs/daal: library of optimized algorithmic building blocks for data analysis stages most commonly associated with solving Big Data problems

  596132 - Assigned to Default Assignee for New Packages
• sci-libs/arpack-3.1.3-r1 - configure: error: Cannot find LAPACK libraries

  596920 - Assigned to Gentoo Science Related Packages
• sci-libs/libsigrok-0.4.0: build tries to write to /root/cache when running `dot` for doxygen generation

  602608 - Assigned to Embedded Gentoo Team
• sci-libs/quicktions ebuild request

  612666 - Assigned to Default Assignee for New Packages
• sci-libs/pastix-5.2.3 fails tests - cp: cannot create regular file '/usr/bin/pastix-conf': Permission denied

  619316 - Assigned to Gentoo Science Related Packages
• sci-libs/mrpt - ebuild request The Mobile Robot Programming Toolkit

  621566 - Assigned to Default Assignee for New Packages
• sci-libs/pgplot-5.2.2-r6 will not build with USE static-libs: recompile with -fPIC

  625776 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cbc-2.8.9 : ./.../libCbcSolver.so: undefined reference to virtual thunk to OsiClpSolverInterface::getColName[abi:cxx11](int, unsigned int) const

  638240 - Assigned to Gentoo Science Related Packages
• sci-libs/arpack-3.5.0 : configure: error: cannot find BLAS libraries

  638384 - Assigned to Gentoo Science Related Packages
• sci-libs/htslib - provide USE flags for curl and gcs s3 plugins

  645674 - Assigned to Gentoo Science Biology related packages
• sci-libs/pcl-1.8.1 installs broken pcl_features-1.8.pc

  646124 - Assigned to Alexis Ballier
• sci-libs/atlas - *** No rule to make target 'liblapack.a', needed by 'libclapack.a'. Stop

  648386 - Assigned to Gentoo Science Related Packages
• sci-libs/xdmf2-1.0_p141226-r2 with sys-cluster/mpich-3.2-r2 - Found MPI_C: /usr/lib64/libmpi.so (found version "3.1") -- Could NOT find MPI_CXX (missing: MPI_CXX_WORKS)

  649426 - Assigned to Gentoo Science Related Packages
• sci-libs/xdmf2-1.0_p141226-r4: compile failure: libXdmfCore.so: undefined reference to H5...

  657964 - Assigned to Gentoo Science Related Packages
• sci-libs/atlas-3.11.39 - ACCESS DENIED cannot create directory ‘/etc/env.d/alternatives/cblas’: Permission denied

  658026 - Assigned to Gentoo Science Related Packages
• sci-libs/udunits-2.2.20 : * Currently no working fortran compiler is available (see /var/tmp/portage/sci-libs/udunits-2.2.20/temp/_fortran_compile_test.log for information)

  662538 - Assigned to Gentoo Science Related Packages
• sci-libs/gdal: Validate DEPEND on virtual/mysql

  666056 - Assigned to Sci-geo Project
• sci-libs/torch7 framework new package request

  667116 - Assigned to Default Assignee for New Packages
• sci-libs/calculix - CalculiX - A Free Software Three-Dimensional Structural Finite Element Program

  672548 - Assigned to Default Assignee for New Packages
• sci-libs/netcdf-4.6.1-r1: test failures (t_dap3a, test_cvt3, test_vara, tst_ncdap3.sh)

  673200 - Assigned to Gentoo Science Related Packages
• sci-libs/gsl-1.16 : uninstalling, orphaned links are left behind, causing breakage

  677044 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf5-1.10.5 USE="fortran mpi" - FATAL ERROR: Cannot read module file 'mpi.mod' opened at (1), because it was created by a different version of GNU Fortran

  682794 - Assigned to Gentoo Science Related Packages
• sci-libs/mdal: Mesh Data Abstraction Library - C++ library for handling unstructured mesh data

  684538 - Assigned to Default Assignee for New Packages
• sci-libs/gsl-2.5: test failure: test multifit_nlinear fails

  687342 - Assigned to Gentoo Science Related Packages
• sci-libs/gdcm-2.8.8::imaging - refman.pdf - Error

  687438 - Assigned to Gert Wollny
• sci-libs/umfpack-5.6.2 - configure: error: Cannot find blas libraries

  688792 - Assigned to Gentoo Science Related Packages
• sci-libs/cln-1.3.6 fails to install with USE=doc --> FileNotFoundError: [Errno 2] No such file or directory: b'/doc/cln.pdf'

  707750 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/ann - A Library for Approximate Nearest Neighbor Searching

  709552 - Assigned to Default Assignee for New Packages
• sci-libs/parmetis-4.0.3_p20230326-r1 - QA Notice: The following files contain insecure RUNPATHs: .../usr/lib64/libparmetis.so

  709598 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix-5.2.3 : ebuild uses colon (:) as a sed delimiter

  711156 - Assigned to Gentoo Science Related Packages
• sci-libs/cholmod-3.0.13 : configure: error: Could not find ccolamd library

  711540 - Assigned to Gentoo Science Related Packages
• sci-libs/clblast-0.10.0: CMake Error at /.../FindPackageHandleStandardArgs.cmake:146: Could NOT find OpenCL (missing: OPENCL_LIBRARIES)

  711990 - Assigned to Gentoo Science Related Packages
• sci-libs/sundials-6.2.0 fails tests on x86

  715556 - Assigned to Gentoo Science Related Packages
• sci-libs/dmlc-core-0.5 : /.../logging.h: fatal error: execinfo.h: No such file or directory

  715576 - Assigned to Gentoo musl team
• sci-libs/hdf-4.2.13-r1 : local_nc.h: fatal error: rpc/types.h: No such file or directory

  715632 - Assigned to Gentoo musl team
• sci-libs/coinor-alps-1.5.7 : AlpsSubTree.cpp: error: variable AlpsSubTree::exploreUnitWork(bool, int, double, AlpsExitStatus&, int

  715916 - Assigned to Gentoo musl team
• sci-libs/pcl-1.14.0 : /.../pcl_macros.h: error: #error aligned_malloc not supported on your platform

  716186 - Assigned to Gentoo musl team
• sci-libs/ogdi-4.1.0-r1 installs shared libraries that lack a SONAME

  717178 - Assigned to Gentoo Science Related Packages
• sci-libs/ipopt-3.12.12 cannot had hsl use flag

  720998 - Assigned to Gentoo Science Related Packages
• sci-libs/ogdi fails tests

  721358 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-clp-1.17.6 : ClpFactorization.cpp: error: double CoinFactorization::ftranCountInput_ is protected within this cont

  721930 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cbc-2.10.5 : CbcCutGenerator.cpp: error: class CglTreeInfo has no member named parentSolver

  721932 - Assigned to Gentoo Science Related Packages
• sci-libs/lemon-1.3.1 : /.../ld: /.../libClp.so: undefined reference to CoinArrayWithLength::conditionalNew(long)

  722620 - Assigned to Gentoo Science Related Packages
• sci-libs/gmsh License appears to be incorrect

  723788 - Assigned to Licenses team
• sci-libs/ogdi-4.1.0-r1 calls ar directly

  725618 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-cxx fails tests

  725620 - Assigned to Gentoo Science Related Packages
• sci-libs/orocos-bfl-0.8.0 fails tests

  725624 - Assigned to Alexis Ballier
• sci-libs/orocos-bfl-0.8.0: QA: ./revision: line 1: svn: command not found

  727206 - Assigned to Alexis Ballier
• sci-libs/arprec-2.2.19 installs shared libraries that lack NEEDED entries

  727972 - Assigned to Gentoo Science Related Packages
• sci-libs/spqr-2.0.9-r4 : I can't find file `epsf'.

  729634 - Assigned to Gentoo Science Related Packages
• sci-libs/spqr-2.0.9 - qrdemoc.c:(.text.startup+0x94): undefined reference to `cholmod_l_norm_sparse'

  729636 - Assigned to Gentoo Science Related Packages
• sci-libs/umfpack-5.7.9 fails tests

  731248 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-symphony-5.5.7 fails to compile: ordered comparison between pointer and zero ('int *' and 'int')

  731856 - Assigned to Gentoo Science Related Packages
• sci-libs/hypre-2.21.0 fails to compile (ld.lld: error: undefined symbol: omp_set_num_threads)

  731864 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/dmlc-core-0_p20170719-r1: CMake Error at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:165 (message): Could NOT find OpenMP_C

  731868 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/colpack-1.0.10 fails to compile: GraphColoring/GraphColoring.cpp:974:20: error: expected an OpenMP directive

  731900 - Assigned to Gentoo Science Related Packages
• sci-libs/sundials-6.5.0 fails to compile: ld.lld: error: can't create dynamic relocation R_X86_64_32 against local symbol in readonly segment

  731904 - Assigned to Gentoo Science Related Packages
• sci-libs/arprec calls commands that do not exist (./configure: line 5219: ax_cxx_fma: command not found)

  731912 - Assigned to Gentoo Science Related Packages
• sci-libs/arprec-2.2.19 fails to compile: erfc.cpp:43:33: error: non-constant-expression cannot be narrowed from type

  731916 - Assigned to Gentoo Science Related Packages
• sci-libs/dealii-9.5.2-r1 installs compressed files (manpages, documentation)

  731918 - Assigned to Matthias Maier
• sci-libs/cqrlib fails to compile

  731928 - Assigned to Gentoo Science Related Packages
• sci-libs/octomap fails tests

  733088 - Assigned to Alexis Ballier
• sci-libs/libsigrok: failing test tests/main

  739502 - Assigned to Embedded Gentoo Team
• sci-libs/hdf5-1.10.5-r1 fails tests

  741438 - Assigned to Gentoo Science Related Packages
• sci-libs/lemon-1.3.1 fails tests

  741512 - Assigned to Gentoo Science Related Packages
• sci-libs/nfft-3.3.2 fails tests

  741528 - Assigned to Gentoo Science Related Packages
• sci-libs/orocos-bfl-0.8.0: src/filter/mixtureParticleFilter.cpp:105:27: error: member reference base type 'Mixture<SVar> *' is not a structure or union

  741530 - Assigned to Alexis Ballier
• sci-libs/pastix-5.2.3 fails tests

  741532 - Assigned to Gentoo Science Related Packages
• sci-libs/spqr-2.0.9 fails tests

  741604 - Assigned to Gentoo Science Related Packages
• sci-libs/dmlc-core-0_p20170719 : /.../s3_filesys.cc: error: aggregate HMAC_CTX ctx has incomplete type and cannot be defined

  743004 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/indilib-1.9.8 installs static library /usr/lib64/libindiclient.a

  746050 - Assigned to Gentoo KDE team
• sci-libs/clblast: enable BLAS/CBLAS drop in replacement functionality

  747142 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix-5.2.2.22-r1: parallel build error: i686-pc-linux-gnu/bin/ld: cannot open output file /var/tmp/portage/sci-libs/pastix-5.2.2.22-r1/image//usr/lib/libmatrix_driver_32bit_nompi_smp_int_double_real_scotch_.so: No such file or directory

  754321 - Assigned to Gentoo Science Related Packages
• sci-libs/mkl: symlink provider for BLAS CBLAS LAPACK LAPACKE no longer works

  754930 - Assigned to Gentoo Science Related Packages
• sci-libs/libticonv-1.1.5 :torture_ticonv.c:(.text.startup+<snip>): undefined reference to ticonv_iconv_open

  756718 - Assigned to Gentoo Science Related Packages
• sci-libs/gdal-3.2.0 USE=doc Extension error: Could not import extension breathe (exception: No module named 'breathe')

  759523 - Assigned to Sci-geo Project
• sci-libs/lapack-3.9.0 fails to build with existing ninja versions

  760153 - Assigned to Michał Górny
• sci-libs/pastix-5.2.3 : sopalin/.../starpu_submit_tasks.c: error: expected expression before ; token

  769779 - Assigned to Gentoo Science Related Packages
• sci-libs/arprec-2.2.19 - main.cpp: error: variable or field FC_FUNC_ declared void

  775293 - Assigned to Gentoo Science Related Packages
• sci-libs/trilinos-13.0.1 calls python directly (dev-lang/python-exec[-native-symlinks])

  776391 - Assigned to Matthias Maier
• sci-libs/netcdf-cxx-4.3.1[examples] install useless .o in /usr/share

  779352 - Assigned to Gentoo Science Related Packages
• sci-libs/libsigrok-0.5.2-r1 - x86_64-pc-linux-gnu-gcc: error: src/.../libdrivers.o: No such file or directory

  780840 - Assigned to Embedded Gentoo Team
• sci-libs/alglib-3.17.0 fails tests

  789750 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix-5.2.3[starpu] - /.../ld: sopalin/.../starpu_submit_tasks_ge.o:(.bss+<snip>): multiple definition of starpu_pastix_sched_po

  790425 - Assigned to Gentoo Science Related Packages
• sci-libs/pcl-1.11.1[tutorials] Could not import extension sphinxcontrib.doxylink.doxylink (exception: No module named 'sphinxcontrib.doxylink')

  790578 - Assigned to Alexis Ballier
• sci-libs/libint-2.9.0 does not respect LDFLAGS

  792384 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-* examples installed unconditionally

  792900 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.7.4 QA Notice: The following files contain insecure RUNPATHs

  795822 - Assigned to Gentoo Science Related Packages
• sci-libs/gts-20121130 QA Notice: Missing soname symlink

  795831 - Assigned to Gentoo Science Related Packages
• sci-libs/dcmtk: is OFFIS license free?

  796491 - Assigned to Licenses team
• sci-libs/libsigrok-0.5.2-r2 - x86_64-pc-linux-gnu-gcc: error: missing filename after -o

  799845 - Assigned to Embedded Gentoo Team
• sci-libs/lis-1.6.5 - /.../ld: fortran/.../libsaamg.a(lis_s_aggregate_mod.o): relocation R_X86_64_PC32 against symbol _data_structu

  800644 - Assigned to Gentoo Science Related Packages
• sci-libs/atlas-3.10.2 - multiple definition of `ATL_SetAtomicCount'; libatlas.a(ATL_SetAtomicCount_arch.o):ATL_SetAtomicCount_arch.c:(.text+0x0): first defined here

  801223 - Assigned to Gentoo Science Related Packages
• sci-libs/octomap-1.9.8 - ninja: error: unknown target docs_dynamicEDT3D

  801232 - Assigned to Alexis Ballier
• sci-libs/pastix-5.2.3 calls ranlib directly

  802180 - Assigned to Gentoo Science Related Packages
• sci-libs/gsl-2.7 - FAIL: test_c11

  805578 - Assigned to Gentoo Science Related Packages
• sci-libs/ceres-solver-2.0.0 - /.../ld: /.../libunwind-x86_64.so: error adding symbols: file in wrong format

  806478 - Assigned to Gentoo Science Related Packages
• sci-libs/rtabmap-0.20.13-r1: librtabmap_gui.so.0.20.13: undefined reference to `pcl::visualization::PCLVisualizer::removeCoordinateSystem(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int)'

  808785 - Assigned to Alexis Ballier
• sci-libs/profnet-1.0.22 installs files with broken symlink

  809734 - Assigned to Gentoo Science Biology related packages
• sci-libs/fftw-3.3.9 - configure: error: could not find mpi library for --enable-mpi

  810052 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix-6.0.3 installs modules that are not byte-compiled

  810259 - Assigned to Gentoo Science Related Packages
• sci-libs/rocBLAS-5.1.3-r4 does not respect CFLAGS/LDFLAGS

  810721 - Assigned to Gentoo Science Related Packages
• sci-libs/lis-1.6.5 - Error: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(4)/REAL(8)).

  814338 - Assigned to Gentoo Science Related Packages
• sci-libs/ginkgo-1.4.0 - configure fails: Could not find a package configuration file provided by "hipblas"

  814845 - Assigned to Matthias Maier
• sci-libs/adolc-2.7.2 - ampisupport.cpp: error: struct ADTOOL_AMPI_FPCollection has no member named push_CallCodeReserve_f

  815007 - Assigned to Gentoo Science Related Packages
• sci-libs/libqalculate-4.1.1 calls cc directly

  815514 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf5-1.12.1-r1 does not respect CFLAGS

  817770 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix-6.0.3 fails tests

  821565 - Assigned to Gentoo Science Related Packages
• sci-libs/dcmtk-3.6.5 - /.../syncpub.h: error: invalid conversion from int to dcmtk::log4cplus::thread::MutexImplBase [-fpermissive

  822171 - Assigned to Gentoo Science Biology related packages
• sci-libs/spqr-2.0.9-r1 - spqr_parallel.cpp: fatal error: tbb/task_scheduler_init.h: No such file or directory

  825514 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.7.4: nc_test fails when optimization level is -O2

  827042 - Assigned to Gentoo Science Related Packages
• sci-libs/libxc-5.1.6: fails tests

  827334 - Assigned to Gentoo Science Related Packages
• sci-libs/gmsh: bundles dev-cpp/picojson

  828029 - Assigned to Matthias Maier
• sci-libs/suitesparse to 5.10.1 (and related) version bump request (5.4.0 is blocking cleanup of sci-libs/cholmod-3.0.13)

  829502 - Assigned to Gentoo Science Related Packages
• sci-libs/arprec-2.2.19 - main.cpp: error: f_main was not declared in this scope

  829620 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-cxx-4.3.1 - ncAtt.cpp:(.text+<snip>): undefined reference to nc_inq_attlen

  829795 - Assigned to Gentoo Science Related Packages
• sci-libs/adolc-2.7.2 - configure: error: in /.../ADOL-C-releases-2.7.2:

  830093 - Assigned to Gentoo Science Related Packages
• sci-libs/flann-1.9.1-r4: Fails in cmake, CMake Error at src/matlab/CMakeLists.txt:19 (get_property):

  830424 - Assigned to Gentoo Science Related Packages
• sci-libs/trilinos-13.4.0-r3 - /.../Kokkos_Stacktrace.cpp: fatal error: execinfo.h: No such file or directory

  830687 - Assigned to Gentoo musl team
• sci-libs/netcdf-4.8.1-r1 fails to compile: zip.h:285:21: error: expected :, ,, ;, } or __attribute__ before str

  830895 - Assigned to Gentoo Science Related Packages
• sci-libs/sundials-5.8.0 - ERROR: F2003 interface is not compatible with 32-bit indicies

  831110 - Assigned to Gentoo Science Related Packages
• sci-libs/ipopt-3.14.4-r1 - checking if .../javac failed (see config.log, check the CLASSPATH?)

  831367 - Assigned to Gentoo Science Related Packages
• sci-libs/ipopt-3.14.4 - QA Notice: Unrecognized configure options: --with-mumps-incdir, --with-mumps-lib

  831368 - Assigned to Gentoo Science Related Packages
• sci-libs/libsigrok-0.5.2-r3 fails to compile: zip.h:285:21: error: expected :, ,, ;, } or __attribute__ before str

  831570 - Assigned to Embedded Gentoo Team
• sci-libs/coinor-alps-1.5.7 fails to compile: AlpsSearchStrategyBase.h:97:35: error: assigning to AlpsSearchType from incompatible type int

  831681 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-bcps-0.94.5 fails to compile: AlpsSearchStrategyBase.h:97:35: error: assigning to AlpsSearchType from incompatible type int

  831682 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-blis-0.94.8 fails to compile: AlpsSearchStrategyBase.h:97:35: error: assigning to AlpsSearchType from incompatible type int

  831683 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-dip-0.95.0-r2 fails to compile: AlpsSearchStrategyBase.h:97:35: error: assigning to AlpsSearchType from incompatible type int

  831684 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-flopcpp-1.2.5 fails to compile: MP_set.hpp:212:9: error: no matching conversion for functional-style cast from const flopc::SUBSETREF to flopc::MP_domain

  831685 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-symphony-5.6.17 fails to compile: ld.lld: error: cannot find linker script P

  831686 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf-4.2.15-r1 fails to compile: ld.lld: error: cant create dynamic relocation R_X86_64_32 against local symbol in readonly segment; recompile object files with -fPIC or pass -Wl,-z,notext to allow text relocations in the output

  831725 - Assigned to Gentoo Science Related Packages
• sci-libs/qd-2.3.23 fails to link with LLD because of /usr/lib in the link command line

  831799 - Assigned to Gentoo Science Related Packages
• sci-libs/clblas-2.12-r2 fails to compile: fileio.h:44:9: error: unknown type name u_int64_t

  832788 - Assigned to Gentoo Science Related Packages
• sci-libs/libdap-3.20.9 fails to compile: configure: error: Cannot determine DODS XDR integer sizes

  832791 - Assigned to Sci-geo Project
• sci-libs/netcdf-4.8.1-r1 - fails Test #183: nczarr_test_run_ut_mapapi

  832873 - Assigned to Gentoo Science Related Packages
• sci-libs/scotch-7.0.1 fails tests

  833789 - Assigned to Gentoo Science Related Packages
• sci-libs/dmlc-core-0_p20170719-r1 fails to compile: ld: cannot find -ldmlc

  834144 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/orocos-bfl-0.8.0 fails to compile: ! LaTeX Error: File subfigure.sty not found

  834331 - Assigned to Alexis Ballier
• sci-libs/scotch-7.0.1-r1 - common_thread.h: error: unknown type name cpu_set_t

  834726 - Assigned to Gentoo musl team
• sci-libs/avogadrolibs-1.95.1 - /.../gl32.h: error: void _glewActiveTexture(GLenum) redeclared as different kind of entity

  834732 - Assigned to Gentoo Chemistry-Related Packages
• sci-libs/flann-1.9.1-r5[octave] cannot find -loctinterp

  835021 - Assigned to Gentoo Science Related Packages
• =sci-libs/libigl-2.3.0[static-libs]: don't find Eigen/Core during build

  835094 - Assigned to 3D Printing Team
• sci-libs/coinor-cbc: uses variables banned in scope (VariableScope)

  836100 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cgl: uses variables banned in scope (VariableScope)

  836101 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-clp: uses variables banned in scope (VariableScope)

  836102 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-dylp: uses variables banned in scope (VariableScope)

  836103 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-osi: uses variables banned in scope (VariableScope)

  836105 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-utils: uses variables banned in scope (VariableScope)

  836106 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-vol: uses variables banned in scope (VariableScope)

  836107 - Assigned to Gentoo Science Related Packages
• sci-libs/inchi-1.06-r1 fails to compile: ld: util.c:(.text+0x1b75): undefined reference to __isascii

  836860 - Assigned to Gentoo musl team
• sci-libs/netcdf-4.8.1-r1 - automagic dependency on dev-libs/libzip

  836910 - Assigned to Gentoo Science Related Packages
• sci-libs/kissfft-131.1.0 fails to compile: testcpp.cc:46:35: error: M_PIl was not declared in this scope; did you mean M_PI?

  837026 - Assigned to Gentoo Science Related Packages
• sci-libs/scalapack-2.1.0 fails tests on MUSL

  837035 - Assigned to Gentoo Science Related Packages
• sci-libs/p4est-2.8-r1 installs files into unexpected paths

  837044 - Assigned to Matthias Maier
• sci-libs/libgeotiff-1.7.1-r1 - listgeo.c:(<snip>) undefined reference to TIFFGetField

  837287 - Assigned to Sci-geo Project
• sci-libs/hypre-2.21.0 provide pkgconf

  845312 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/ldl-2.2.6 installs libtool files (.la) without corresponding static libraries

  846695 - Assigned to Gentoo Science Related Packages
• sci-libs/libgeotiff-1.7.1-r1 - /.../xtiffio.h: fatal error: tiffio.h: No such file or directory

  846959 - Assigned to Sci-geo Project
• sci-libs/kissfft-131.1.0 add Provides to .pc file

  847472 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cbc-2.10.5 installs libtool files (.la) without corresponding static libraries

  849704 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cgl-0.60.3 installs libtool files (.la) without corresponding static libraries

  849707 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-dylp-1.10.4 installs libtool files (.la) without corresponding static libraries

  849710 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-osi-0.108.6 installs libtool files (.la) without corresponding static libraries

  849713 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-utils-2.11.9 installs libtool files (.la) without corresponding static libraries

  849716 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-vol-1.5.4 installs libtool files (.la) without corresponding static libraries

  849719 - Assigned to Gentoo Science Related Packages
• sci-libs/iml-1.0.5 installs libtool files (.la) without corresponding static libraries

  849926 - Assigned to Gentoo Science Related Packages
• sci-libs/ipopt-3.14.4-r1 installs libtool files (.la) without corresponding static libraries

  849929 - Assigned to Gentoo Science Related Packages
• sci-libs/superlu-4.3-r3 installs libtool files (.la) without corresponding static libraries

  849932 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-cxx-4.2-r301 installs libtool files (.la) without corresponding static libraries

  850940 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.8.1-r2 fails to compile on stable ppc: Could NOT find HDF5

  851660 - Assigned to Gentoo Science Related Packages
• sci-libs/dcmtk-3.6.7 fails to compile (lto): oftest.h:140:7: error: type struct OFTestManager violates the C++ One Definition Rule [-Werror=odr]

  862699 - Assigned to Gentoo Science Biology related packages
• sci-libs/hdf5-1.10.5-r1 installs pre-stripped files

  862759 - Assigned to Gentoo Science Related Packages
• sci-libs/qd-2.3.24 installs pkg-config files that do not respect libdir

  862948 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cgl-0.60.3 - CglLandPUtils.hpp: error: invalid cast from type std::nullptr_t to type OsiRowCut

  865921 - Assigned to Gentoo musl team
• sci-libs/pcl-1.12.1-r2 - /.../sparse_matrix.hpp: error: member reference base type MatrixEntry<T> is not a structure or union

  871435 - Assigned to Alexis Ballier
• sci-libs/coinor-osi-0.108.6 fails tests (MUSL): OsiTestSolverInterfaceIO.cpp:425:22: error: invalid cast from type std::nullptr_t to type const char

  873259 - Assigned to Gentoo Science Related Packages
• sci-libs/dcmtk-3.6.7-r1 installs pkg-config files that fail validation

  873268 - Assigned to Gentoo Science Biology related packages
• sci-libs/dlib-19.24 fails tests (MUSL): new_allocator.h:158:33: error: void operator delete(void, std::size_t) called on pointer <unknown> with nonzero offset [8, 9223372036854775800] [-Werror=free-nonheap-object]

  873301 - Assigned to Gentoo Science Related Packages
• sci-libs/gts-20121130 installs gtk-doc into unexpected paths

  873316 - Assigned to Gentoo Science Related Packages
• sci-libs/libint-2.6.0-r5 fails to compile (MUSL): ! LaTeX Error: File wrapfig.sty not found

  873409 - Assigned to Gentoo Science Related Packages
• sci-libs/vtk-9.1.0-r2 fails to compile (MUSL): loguru.cpp:98:18: fatal error: execinfo.h: No such file or directory

  873601 - Assigned to Gentoo Science Related Packages
• sci-libs/djbfft-0.76-r3 - 8mr.c: error: call to undeclared function fftc8_mul; ISO C99 and later do not support implicit function

  881017 - Assigned to Gentoo Science Related Packages
• sci-libs/lapack-3.12.0-r1 installs more files with FEATURES=test

  881059 - Assigned to Michał Górny
• sci-libs/ogdi-4.1.0-r1 - /.../ld: cannot find -logdi: No such file or directory

  881083 - Assigned to Gentoo Science Related Packages
• sci-libs/atlas-3.10.2 fails to compile: xconfig: config.c:602: ProbeOS: Assertion iret failed

  882009 - Assigned to Gentoo Science Related Packages
• sci-libs/vtk-9.1.0-r4 fails to compile on ppc

  882405 - Assigned to Gentoo Science Related Packages
• sci-libs/metis-5.1.0-r5 installs files that contain insecure RUNPATHs

  882663 - Assigned to Gentoo Science Related Packages
• sci-libs/mkl-2023.1.0.46342 installs files with unresolved SONAME dependencies

  885361 - Assigned to Gentoo Science Related Packages
• sci-libs/atlas-3.10.2 fails to compile (CLANG-STRICTER-SYSTEM): ATLrun.sh: line 4: 310 Segmentation fault $

  886063 - Assigned to Gentoo Science Related Packages
• sci-libs/gerris-20131206-r1 fails to compile (CLANG-STRICTER-SYSTEM): Pointers cannot be stored in doubles on this architecture

  886277 - Assigned to Gentoo Science Related Packages
• sci-libs/vtk-9.2.2-r1 overwrites user's optimization (-O*)

  886317 - Assigned to Gentoo Science Related Packages
• sci-libs/gdal-3.6.1[python] ignores PYTHON_SINGLE_TARGET

  886367 - Assigned to Sci-geo Project
• sci-libs/libxc-5.1.7 fails to compile (CLANG-STRICTER-SYSTEM): libtool.m4: error: problem compiling FC test program

  886456 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-fortran-4.5.4 fails to compile (CLANG-STRICTER-SYSTEM): configure: error: Fortran could not compile .f90 files

  886459 - Assigned to Gentoo Science Related Packages
• sci-libs/qd-2.3.23 fails to compile (CLANG-STRICTER-SYSTEM): configure: error: Fortran does not accept free-form source

  886462 - Assigned to Gentoo Science Related Packages
• sci-libs/superlu_mt-3.1-r1 fails to compile (CLANG-STRICTER-SYSTEM): psgssvx.c:580:2: error: call to undeclared function sp_colorder; ISO C99 and later do not support implicit function declarations [-Werror,-Wimplicit-function-declaration]

  886466 - Assigned to Gentoo Science Related Packages
• sci-libs/gdal-3.5.3: invalid libdir in pkgconfig file on 64 bits system

  887735 - Assigned to Sci-geo Project
• sci-libs/getdata-0.11.0 fails to compile (DASH-SYSTEM): ld: libgetdata.so: undefined reference to gd_coladd

  890429 - Assigned to Gentoo Science Related Packages
• sci-libs/octomap-1.9.8 adds -Werror flag on its own

  890433 - Assigned to Alexis Ballier
• sci-libs/octomap-1.9.8 installs '.a' files without static-libs USE

  890489 - Assigned to Alexis Ballier
• sci-libs/netcdf-fortran-4.5.4 fails tests (DASH-SYSTEM): FAIL: tst_fill_int64

  890503 - Assigned to Gentoo Science Related Packages
• sci-libs/nfft-3.5.2 fails to compile (DASH-SYSTEM): configure: 16116: Bad substitution

  890505 - Assigned to Gentoo Science Related Packages
• sci-libs/arpack-3.8.0 - configure: error: could not compile a Fortran MPI test program

  890511 - Assigned to Gentoo Science Related Packages
• sci-libs/atlas-3.10.2 fails to compile (USR-MERGE-SYSTEM): error: inlining failed in call to ‘always_inline’ ‘_mm256_sub_*’: target specific option mismatch

  891739 - Assigned to Gentoo Science Related Packages
• sci-libs/sundials-6.5.0 fails to compile: f951: Fatal Error: Cannot rename module file test_utilities.mod0 to test_utilities.mod: No such file or directory

  892587 - Assigned to Gentoo Science Related Packages
• sci-libs/miopen: installs incomplate AMDGPU_TARGETS

  893242 - Assigned to Gentoo Science Related Packages
• sci-libs/cantera-2.6.0-r2 fails tests (LIBARCHIVE-SYSTEM): ...............Fatal Python error: Aborted

  894036 - Assigned to Sergey Torokhov
• sci-libs/coinor-dip-0.95.0-r2 fails tests (HARDENED-SYSTEM)

  896408 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-utils-2.11.4 fails to compile (MUSL-CLANG-SYSTEM): CoinOslC.h:37:15: error: ISO C++17 does not allow register storage class specifier [-Wregister]

  898126 - Assigned to Gentoo Science Related Packages
• sci-libs/trilinos-13.4.1 fails to compile (MUSL-CLANG-SYSTEM): trilinos_klu_factor.c:506:19: error: call to undeclared function omp_get_num_threads; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]

  898272 - Assigned to Matthias Maier
• sci-libs/gmsh-4.10.3 fails to compile (MUSL-CLANG-SYSTEM): edgegen.c:1680:18: error: call to undeclared library function strlen with type unsigned long (const char ); ISO C99 and later do not support implicit function declarations [-Wimplicit-function-de

  898280 - Assigned to Matthias Maier
• sci-libs/itpp-4.3.1-r2 fails to compile (MUSL-CLANG-SYSTEM): siso.h:668:5: error: ISO C++17 does not allow register storage class specifier [-Wregister]

  898284 - Assigned to Gentoo Science Related Packages
• sci-libs/spr-3.3.2 fails to compile (MUSL-CLANG-SYSTEM): SprSymMatrix.cc:198:4: error: ISO C++17 does not allow register storage class specifier [-Wregister]

  898292 - Assigned to Gentoo Science Physics related packages
• sci-libs/coinor-cbc-2.10.5 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900561 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-cgl-0.60.3 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900563 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-clp-1.17.6-r1 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900565 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-dylp-1.10.4-r1 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900567 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-osi-0.108.6 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900569 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-utils-2.11.9 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900571 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-vol-1.5.4 has implicit function declarations in configure logs (GCC-13-SYSTEM)

  900573 - Assigned to Gentoo Science Related Packages
• sci-libs/buddy-2.4-r1 has implicit function declarations in configure logs (MUSL-CLANG-SYSTEM)

  900695 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-cxx-4.3.1-r1 fails tests

  901269 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-fortran-4.6.1 fails to compile: error: tag HTML_FOOTER: footer file footer.html does not exist

  901271 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.9.2[doc]: failed to emerge

  901395 - Assigned to Gentoo Science Related Packages
• sci-libs/clfft-2.12.2-r1::science riscv support

  904492 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-bcp-1.4.4 has implicit function declarations in configure logs (MUSL-SYSTEM)

  908309 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-flopcpp-1.2.5 has implicit function declarations in configure logs (MUSL-SYSTEM)

  908310 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-netlib-1.2.9 has implicit function declarations in configure logs (MUSL-SYSTEM)

  908311 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-smi-0.96.1 has implicit function declarations in configure logs (MUSL-SYSTEM)

  908312 - Assigned to Gentoo Science Related Packages
• sci-libs/libsigrok-0.5.2-r5 installs more files with FEATURES=test

  908392 - Assigned to Embedded Gentoo Team
• sci-libs/dcmtk-3.6.7-r1 fails to compile (MUSL-SYSTEM): offile.h:359:16: error: ::fopen64 has not been declared

  908398 - Assigned to Gentoo Science Biology related packages
• sci-libs/nfft-3.5.2 has implicit function declarations in configure logs (MUSL-SYSTEM)

  908450 - Assigned to Gentoo Science Related Packages
• =sci-libs/trilinos-14.0.0: optimization CXXFLAGS not respected

  908835 - Assigned to Matthias Maier
• sci-libs/suitesparseconfig-7.0.0: fails to configure (Could NOT find BLAS (missing: BLAS_LIBRARIES)

  908851 - Assigned to Gentoo Science Related Packages
• sci-libs/cholmod-4.0.3 installs '.a' files without static-libs USE

  908858 - Assigned to Gentoo Science Related Packages
• sci-libs/spqr-3.0.3 installs '.a' files without static-libs USE

  908859 - Assigned to Gentoo Science Related Packages
• sci-libs/avogadrolibs-1.97.0 failed to emerge with USE=vtk - Targets not yet defined

  909437 - Assigned to Gentoo Chemistry-Related Packages
• sci-libs/netcdf-4.9.2 - error: source .../internal.md is not a readable file or directory..kipping.

  912666 - Assigned to Gentoo Science Related Packages
• sci-libs/rocBLAS-5.1.3-r4 installs files into unexpected paths (GLIBC-2.38-SYSTEM)

  913371 - Assigned to Gentoo Science Related Packages
• sci-libs/lapack-3.11 fails to build with samurai

  914429 - Assigned to Michał Górny
• sci-libs/coinor-vol-1.5.4 - [clang] ./VolVolume.hpp: error: ISO C++17 does not allow register storage class

  919381 - Assigned to Gentoo Science Related Packages
• sci-libs/hipFFT-5.7.1-r1: CMake Error at /usr/lib64/cmake/hip/FindHIP.cmake:105 (message): Specify HIP_ROOT_DIR

  919705 - Assigned to Gentoo Science Related Packages
• sci-libs/lapack-3.12.0 fails to build with clang-17 and lto enabled

  919740 - Assigned to Michał Górny
• sci-libs/clblast is not tuned in the build process even if package name claims to be "tuned" blas

  919750 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-osi-0.108.6 - [clang] OsiSolverInterfaceTest.cpp: error: no member named bind2nd in

  919825 - Assigned to Gentoo Science Related Packages
• sci-libs/rocBLAS-5.7.1-r1: TypeError: buildSourceCodeObjectFile() missing 2 required positional arguments: 'outputPath' and 'kernelFile'

  920554 - Assigned to Gentoo Science Related Packages
• sci-libs/suitesparse does not packages RBio

  921100 - Assigned to Gentoo Science Related Packages
• sci-libs/mathgl-8.0.1-r2 fails to compile (GCC-14-SYSTEM): i:110: ==> Fatal error occurred, no output PDF file produced!

  921350 - Assigned to Gentoo Science Related Packages
• sci-libs/pcl: cuda should be build with supported compiler

  921582 - Assigned to Alexis Ballier
• sci-libs/geos-3.11.2: fails tests

  921956 - Assigned to Sci-geo Project
• sci-libs/rocBLAS-5.7.1-r1 FAILED: Tensile/lib/CMakeFiles/TensileHost.dir/source/hip/HipSolutionAdapter.cpp.o /usr/include/c++/v1/deque:436:67: error: expected ')'

  922071 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.9.2 installs pkg-config files that do not respect libdir

  924363 - Assigned to Gentoo Science Related Packages
• sci-libs/rocSPARSE-5.7.1-r1 - CMake Error at clients/cmake_install.cmake:46 (file): file INSTALL cannot find rocsparse_common.yaml

  924446 - Assigned to Gentoo Science Related Packages
• sci-libs/gdal-3.8.0: CMake Error at cmake/helpers/CheckDependentLibraries.cmake:202 (message): Configured to use ORACLE, but not found

  924675 - Assigned to Sci-geo Project
• sci-libs/p4est-2.8.5-r3 fails to compile: mv failed

  924972 - Assigned to Matthias Maier
• sci-libs/gdal-3.9.1-r1 one or more CMake variables were not used by the project

  925072 - Assigned to Sci-geo Project
• sci-libs/rocBLAS-5.7.1-r1: 40G build size

  925087 - Assigned to Gentoo Science Related Packages
• sci-libs/gdal-3.9.1-r1 problems with installed bash completions

  925307 - Assigned to Sci-geo Project
• sci-libs/sundials[fortran]: fails to compile w/ read-only segment has dynamic relocations

  925552 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-4.9.2 fails to compile: semantics.c:605:60: error: passing argument 2 of ncaux_class_alignment from incompatible pointer type [-Wincompatible-pointer-types]

  925853 - Assigned to Gentoo Science Related Packages
• sci-libs/arprec-2.2.19 fails to compile: fft3.cpp:69:3: error: ISO C++17 does not allow register storage class specifier [-Wregister]

  926266 - Assigned to Gentoo Science Related Packages
• sci-libs/buddy-2.4-r1 fails to compile: lexer.cxx:623:2: error: ISO C++17 does not allow register storage class specifier [-Wregister]

  926267 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf5-1.10.5-r1 fails to compile: expr: syntax error: unexpected argument 1000000

  926311 - Assigned to Gentoo Science Related Packages
• sci-libs/levmar-2.6-r1 fails tests: lmdemo: symbol lookup error: liblevmar.so: undefined symbol: dsytrf_

  926313 - Assigned to Amy Liffey
• sci-libs/coinor-couenne-0.5.8-r1 fails to compile: dsyevx_wrapper.cpp:(.text+0x177): undefined reference to dsyev_

  926334 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-mp-1.8.4 fails tests: make: [Makefile:510: test] Segmentation fault

  926335 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-fortran-4.6.1 installs pkg-config files that do not respect libdir

  926336 - Assigned to Gentoo Science Related Packages
• sci-libs/nfft-3.5.2 fails to compile: ld: libfastsum_threads.a(libfastsum_threads_la-fastsum.o): undefined reference to symbol omp_get_num_threads@@OMP_1.0

  926457 - Assigned to Gentoo Science Related Packages
• sci-libs/gdal-3.9.1-r1 installs deprecated .egg/.egg-info

  926500 - Assigned to Sci-geo Project
• sci-libs/mumps-5.3.5-r1: won't compile with USE=mpi if openmpi doesn't have USE=fortran

  927635 - Assigned to Gentoo Science Related Packages
• sci-libs/htslib-1.17 has implicit function declarations in configure logs

  927873 - Assigned to Gentoo Science Biology related packages
• sci-libs/trilinos-15.0.0 fails to compile: Tpetra_Distributor.hpp:829:34: error: static assertion failed: Tpetra::Distributor::computeSends: sizeof(size_t) < sizeof(OrdinalType)

  928017 - Assigned to Matthias Maier
• sci-libs/dmlc-core-0.5 fails to compile: recordio_test.cc:32:24: error: no matching function for call to max(std::__cxx11::basic_string<char>::size_type, long unsigned int)

  928019 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/coinor-alps-1.5.7 has implicit function declarations in configure logs

  928021 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-bcps-0.94.5 has implicit function declarations in configure logs

  928022 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-blis-0.94.8 has implicit function declarations in configure logs

  928023 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-bonmin-1.8.8 has implicit function declarations in configure logs

  928024 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-couenne-0.5.8-r1 has implicit function declarations in configure logs

  928025 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-dip-0.95.0-r2 has implicit function declarations in configure logs

  928026 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-mp-1.8.4 has implicit function declarations in configure logs

  928027 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-symphony-5.6.17 has implicit function declarations in configure logs

  928029 - Assigned to Gentoo Science Related Packages
• sci-libs/libint-2.9.0 fails tests

  928048 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix-6.0.3 fails to compile: Could NOT find CBLAS (missing: CBLAS_WORKS)

  928057 - Assigned to Gentoo Science Related Packages
• sci-libs/vtk: fails tests with: Loguru caught a signal: SIGFPE

  928127 - Assigned to Paul Zander
• sci-libs/lapack-3.12.0-r1[eselect-ldso], sci-libs/openblas-0.3.26[eselect-ldso]: don't work on musl (was: do not install properly breaking "Blas-lapack-switch")

  928506 - Assigned to Michał Górny
• sci-libs/octomap-1.9.8 fails to compile: OcTreeBase.h:46:21: error: template-id not allowed for constructor in C++20 [-Werror=template-id-cdtor]

  928853 - Assigned to Alexis Ballier
• sci-libs/hdf: update to hdf 4.3.0

  928910 - Assigned to Gentoo Science Related Packages
• sci-libs/spqr-2.0.9-r4 - failed to emerge with USE=doc

  929098 - Assigned to Gentoo Science Related Packages
• sci-libs/vtk fails to compile missing dependency dev-libs/c-blosc

  930711 - Assigned to Paul Zander
• sci-libs/atlas-3.10.2 Make.top:1: Make.inc: No such file or directory

  930954 - Assigned to Gentoo Science Related Packages
• sci-libs/rocBLAS-5.7.1-r2: error: option 'cf-protection=return' and 'cf-protection=branch' cannot be specified on this target

  931093 - Assigned to Gentoo Science Related Packages
• sci-libs/rocBLAS-5.7.1-r2 fails with IndexError: list index out of range

  931674 - Assigned to Gentoo Science Related Packages
• sci-libs/rccl and sci-libs/composable-kernel does not respect amdgpu_flags

  932188 - Assigned to Gentoo Science Related Packages
• sci-libs/vtk-9.3.0[cuda] huge RAM requirements for compilation

  932464 - Assigned to Paul Zander
• sci-libs/netcdf-4.9.2-r1 fails tests on ppc64 big-endian

  933141 - Assigned to Gentoo Science Related Packages
• sci-libs/trilinos-16.0.0 one or more CMake variables were not used by the project

  934031 - Assigned to Matthias Maier
• sci-libs/blis-1.0 fails tests on arm: libblis: Invalid architecture id value.

  934524 - Assigned to Michał Górny
• sci-libs/rocWMMA-6.1.1 fails to compile

  934980 - Assigned to Gentoo Science Related Packages
• sci-libs/rocBLAS-6.1.1 fails to compile

  935047 - Assigned to Gentoo Science Related Packages
• sci-libs/gdal-3.9.0 - add missing USE=shp or USE=shapelib

  935567 - Assigned to Sci-geo Project
• sci-libs/armadillo-12.8.2 fails with multiple const class arma::Col<eT>::fixed<fixed_n_elem>’ has no member named ...

  936508 - Assigned to Andreas K. Hüttel
• sci-libs/atlas-3.11.41 fails to compile: probe_arch.c:201:33: error: passing argument 1 of strlen from incompatible pointer type [-Wincompatible-pointer-types]

  936672 - Assigned to Paul Zander
• sci-libs/atlas-3.11.41 - gcc: error: unrecognized command-line option ‘-V’

  936680 - Assigned to Gentoo Science Related Packages
• sci-libs/gdal-3.9.0 fails compiling armadillo test/check with =sci-libs/armadillo-12.8.2

  936846 - Assigned to Sci-geo Project
• sci-libs/getdata-0.11.0-r2 fails tests: FAIL: error_verbose_prefix

  937248 - Assigned to Gentoo Science Related Packages
• sci-libs/stellarsolver-2.6 fails to compile: os-features.h:113:6: error: conflicting types for qsort_r; have void(void , size_t, size_t, void , int ()(void , const void , const void )) {aka void(void , long unsigned int, long unsigned int, void , int ()(

  937322 - Assigned to Gentoo KDE team
• sci-libs/djbfft-0.76-r3 - pre4.c: error: implicit declaration of function fftc4_mul

  938322 - Assigned to Gentoo musl team
• sci-libs/gdal-3.9.1 missing optional dependency on sci-libs/libaec

  938364 - Assigned to Sci-geo Project
• sci-libs/libcerf-1.17 installs pkg-config file with mismatched libdir (seen with sci-visualization/gnuplot-6.0.1)

  938472 - Assigned to Gentoo Science Related Packages
• sci-libs/libint-2.9.0 fails to compile: memory.h:156:11: error: intptr_t does not name a type

  939020 - Assigned to Gentoo Science Related Packages
• sci-libs/trilinos-16.0.0 fails to compile: gtest-all.cc:9037:26: error: uintptr_t does not name a type

  939068 - Assigned to Matthias Maier
• sci-libs/dlib-19.24.2 fails to compile: type_traits.h:103:68: error: uint8_t was not declared in this scope

  939094 - Assigned to Gentoo Science Related Packages
• sci-libs/libsigrok-0.5.2-r5 - [gcc-15] [slibtool] rdlibtool: error logged in slbt_exec_link_create_executable(), line 246: flow error: unexpected condition or other.

  939823 - Assigned to Embedded Gentoo Team
• sci-libs/hdf-4.2.15-r2 fails to compile on loong: hdfi.h:1449:1: error: unknown type name 'No'

  940085 - Assigned to Gentoo Science Related Packages
• sci-libs/blis-1.0 fails to compile: bli_x86_asm_macros.h:102:21: error: the register xmm15 cannot be clobbered in asm for the current target

  942061 - Assigned to Michał Górny
• sci-libs/coinor-bonmin-1.8.8 fails tests: Exception message: libhsl.so: cannot open shared object file: No such file or directory

  942062 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-symphony-5.6.17 fails to compile: sym_lp_solver.h:118:2: error: error Undefined or unknown LP solver

  942064 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-mp-1.8.4 fails to compile: configure: error: Required package Cbc unavailable

  942068 - Assigned to Gentoo Science Related Packages
• sci-libs/qd-2.3.24 uses automake in maintainer-mode

  942117 - Assigned to Gentoo Science Related Packages
• sci-libs/lemon-1.3.1-r2 fails to compile: ld: libClpSolver.so.1: undefined reference to f_read_ASL

  942120 - Assigned to Gentoo Science Related Packages
• sci-libs/p4est-2.8.6 fails tests

  942121 - Assigned to Matthias Maier
• sci-libs/avogadrolibs-1.97.0 - [gcc-15] /.../cp2kinputdialog.cpp: error: type Avogadro::QtPlugins::BasisOption violates the C++ One Definition Rule [-Werror=odr]

  942463 - Assigned to Gentoo Chemistry-Related Packages
• sci-libs/fftw-3.3.10 fails to compile: simd-neon.h:47:2: error: error compiling simd-neon.h requires -mfpu=neon or equivalent

  942588 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf-4.2.15-r2 fails to compile: xdrposix.c:304:5: error: initialization of int32_t ()(struct __rpc_xdr , u_int) {aka int ()(struct __rpc_xdr , unsigned int)} from incompatible pointer type netlong ()() {aka long int ()()} [-Wincompatible-pointer

  942866 - Assigned to Gentoo Science Related Packages
• =sci-libs/ogdi-4.1.0-r1 fails with gcc-15.0.0_pre20241117: ../vpfselec.c:103:4: error: number of arguments doesn’t match prototype

  943714 - Assigned to Gentoo Science Related Packages
• sci-libs/superlu_mt-3.1-r1 fails to compile: psgssvx.c:415:19: error: conflicting types for slamch_; have double(char )

  944854 - Assigned to Gentoo Science Related Packages
• sci-libs/pgplot-5.2.2-r8 fails to compile: x2driv.c:192:25: error: too many arguments to function figdisp_sendcommand

  944857 - Assigned to Gentoo Science Related Packages
• sci-libs/netcdf-fortran-4.6.1 fails to compile: Error: Type mismatch between actual argument at (1) and actual argument at (2) REAL(8))

  944859 - Assigned to Gentoo Science Related Packages
• sci-libs/libint-1.1.6 fails to compile: build_libint.c:70:5: error: too many arguments to function punt

  944861 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-dylp-1.10.4-r1 fails to compile: dylib_std.h:67:16: error: two or more data types in declaration specifiers

  944862 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf-4.2.15-r2 fails to compile: array.c:493:21: error: too many arguments to function xlen_funct

  944863 - Assigned to Gentoo Science Related Packages
• sci-libs/djbfft-0.76-r3 fails to compile: byte_copy.c:7:1: error: number of arguments doesnt match prototype

  944864 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-csdp-6.2.0 fails to compile: calc_dobj.c:28:9: error: too many arguments to function ddot_

  944865 - Assigned to Gentoo Science Related Packages
• sci-libs/djbfft-0.76-r3 fails to compile: strerr.h:61:1: error: too many arguments to function strerr_die

  945018 - Assigned to Gentoo Science Related Packages
• sci-libs/scotch-7.0.1-r1 fails to compile: module.h:241:37: error: initialization of int ()(void) from incompatible pointer type int ()(ArchCmplt const restrict, FILE const restrict) {aka int ()(struct ArchCmplt_ const restrict, FILE const restrict)} [-W

  945019 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf-4.2.15-r2 fails to compile: array.c:476:24: error: assignment to int ()(void) from incompatible pointer type int ()(NC_string ) [-Wincompatible-pointer-types]

  945045 - Assigned to Gentoo Science Related Packages
• sci-libs/plplot-5.15.0_p6-r1 - [libtool] [gcc-15] test-drv-info.c: error: passing argument 2 of signal from incompatible pointer type [-Wincompatible-pointer-types]

  945155 - Assigned to Gentoo Science Related Packages
• sci-libs/vtk-9.3.0-r3 GUISupport/Qt/QVTKOpenGLWindow.cxx:255:43: error: 'GL_BACK_LEFT' was not declared in this scope

  945731 - Assigned to Paul Zander
• sci-libs/proj: Update to 9.5.1

  945814 - Assigned to Sci-geo Project
• sci-libs/vtk-9.3.1[cgns] fails to compile with sci-libs/hdf5[-cxx] CMake error: "missing: HDF5_INCLUDE_DIRS"

  945964 - Assigned to Paul Zander
• sci-libs/opencascade[gles2-only] build error

  946076 - Assigned to Paul Zander
• sci-libs/gsl-2.7.1-r3 test fail : linalg : complex_LU_decomp, QR_update, cholesky_invert unscaled hilbert ; spmatrix ; rng

  946160 - Assigned to Gentoo Science Related Packages
• sci-libs/colamd: wrong SRC_URI

  946173 - Assigned to Gentoo Science Related Packages
• sci-libs/suitesparseconfig: wrong SRC_URI

  946174 - Assigned to Gentoo Science Related Packages
• sci-libs/punc-1.5 fails to compile: sh: line 21: cd: umfpack: No such file or directory

  946333 - Assigned to Gentoo Science Related Packages
• sci-libs/hypre-2.24.0 fails to compile: struct_vector.c:797:1: error: conflicting types for hypre_StructVectorSetFunctionValues; have HYPRE_Int(hypre_StructVector , HYPRE_Complex ()(HYPRE_Int, HYPRE_Int, HYPRE_Int)) {aka int(struct hypre_StructVector_str

  946359 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/mpfi-1.5.4_p20220401: fails tset_ld test on hppa

  947119 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/gdal-3.9.1 fails to compile error: struct std::__cxx11::basic_stringbuf<_CharT, _Traits, _Alloc>::__xfer_bufptrs’ redeclared

  947689 - Assigned to Sci-geo Project
• sci-libs/libint-1.1.6 fails to compile: <command-line>: fatal error: cstdint: No such file or directory (mixes CFLAGS and CXXFLAGS)

  948099 - Assigned to Gentoo Science Related Packages
• sci-libs/trilinos-16.0.0 fails to compile: KokkosSparse_spadd_handle.hpp:113:44: error: class KokkosSparse::SPADDHandle<lno_row_view_t_, lno_nnz_view_t_, scalar_nnz_view_t_, ExecutionSpace, MemorySpace> has no member named sort_option [-Wtemplate-body]

  948101 - Assigned to Matthias Maier
• sci-libs/lrslib-073 fails to compile: lrslib.h:154:23: error: passing argument 2 of signal from incompatible pointer type [-Wincompatible-pointer-types]

  948102 - Assigned to Gentoo Science Related Packages
• sci-libs/fetk and subcomponents: tree clean request

  949099 - Assigned to Gentoo Chemistry-Related Packages
• sci-libs/gmsh-4.13.1-r1[gmm] - error: ‘MUMPS_solve’ is not a member of ‘gmm’

  949489 - Assigned to Matthias Maier
• sci-libs/rocRAND: error: no member named 'par_unseq' in namespace 'std::execution'

  949614 - Assigned to Sv. Lockal
• sci-libs/spqr-2.0.9-r4 - [texlive] [glibc] [gcc-15] [ffmpeg] ln: failed to create symbolic link ./spqr_user_guide.tex: File exists

  949624 - Assigned to Gentoo Science Related Packages
• sci-libs/coinor-clp fails to configure on 'error: Cannot find symbol(s) amd_defaults with AMD'

  949697 - Assigned to Gentoo Science Related Packages
• sci-libs/fftw - ambiguous use flag "threads" (lacks description)

  950329 - Assigned to Gentoo Science Related Packages
• sci-libs/ceres-solver-2.2.0-r1 has an automagic dependency on sci-libs/metis

  951158 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf5-1.14.4_p3-r1: Include dirs contain /var/tmp/portage

  951537 - Assigned to Gentoo Science Related Packages
• sci-libs/ceres-solver: needs porting to Python 3.13

  952668 - Assigned to Gentoo Science Related Packages
• sci-libs/dlib: needs porting to Python 3.13

  952670 - Assigned to Gentoo Science Related Packages
• sci-libs/libsvm: needs porting to Python 3.13

  952674 - Assigned to Gentoo Science Related Packages
• sci-libs/pastix: needs porting to Python 3.13

  952678 - Assigned to Gentoo Science Related Packages
• sci-libs/lapack-3.12.0-r1 fails to build with distcc: main.c:(.text.startup+0xa): undefined reference to `VerifyFortran'

  952947 - Assigned to Michał Górny
• sci-libs/plplot[qt5] must port to Qt6

  953991 - Assigned to Gentoo Science Related Packages
• sci-libs/hipBLAS should depend on virtual/fortran

  955133 - Assigned to Gentoo Science Related Packages
• sci-libs/opencascade[examples,inspector] must port to Qt6

  955651 - Assigned to Paul Zander
• sci-libs/flann-1.9.2_p20221027-r1 - failed to emerge with USE=mpi

  955662 - Assigned to Gentoo Science Related Packages
• sci-libs/pcl: 1.15.0 version bump

  955854 - Assigned to Alexis Ballier
• sci-libs/qd-2.3.24 - QA Notice: pkg-config files not respecting libdir found

  956302 - Assigned to Gentoo Science Related Packages
• sci-libs/vtk-9.4.2 upgrade from stable sci-libs/vtk-9.3.1 compile tests failure

  956619 - Assigned to Paul Zander
• sci-libs/plplot-5.15.0_p15[python,qt5]: *** [bindings/qt_gui/pyqt5/CMakeFiles/generate_pyqt5_source.dir/build.make:77: bindings/qt_gui/pyqt5/sipAPIplplot_pyqt5.h] Error 1

  956649 - Assigned to Gentoo Science Related Packages
• sci-libs/ta-lib-0.6.4 version bump, new upstream

  957124 - Assigned to No maintainer - Look at https://wiki.gentoo.org/wiki/Project:Proxy_Maintainers if you want to take care of it
• sci-libs/libsigrok-0.6.0_pre20241020 fails to compile without USE=serial

  957126 - Assigned to Embedded Gentoo Team
• sci-libs/plplot-5.15.0_p15 - QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  957438 - Assigned to Gentoo Science Related Packages
• sci-libs/opencascade-7.8.1 - [gcc-16] QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  957527 - Assigned to Paul Zander
• sci-libs/libspatialindex-1.9.3-r2 - QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  957566 - Assigned to 3D Printing Team
• sci-libs/metis-5.2.1-r2 - QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  957609 - Assigned to Gentoo Science Related Packages
• sci-libs/gklib-5.1.1_p20230327-r1 - QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  957610 - Assigned to Gentoo Science Related Packages
• sci-libs/hdf-4.2.15-r2 - failed to emerge with gcc 15

  957897 - Assigned to Gentoo Science Related Packages
• sci-libs/hypre-2.32.0 - error: ‘bool’ cannot be defined via ‘typedef’

  958036 - Assigned to Gentoo Science Mathematics related packages
• sci-libs/lapack-3.12.1: install library with undefined references, breaking dev-python/numpy configure

  958884 - Assigned to Michał Górny
• sci-libs/netcdf-cxx-4.3.1-r1 fails to compile against sci-libs/netcdf-4.9.3-r1 even if USE=hdf5 enabled

  959385 - Assigned to Gentoo Science Related Packages
• sci-libs/gdal: breaks building sci-libs/pdal-2.9.0 (error: ‘uint8_t’ was not declared in this scope)

  959583 - Assigned to Sci-geo Project
• sci-libs/libsigrok-0.6.0_pre20241020 - [meson] [jdk25] [gettext] [gcc-16] src/.../api.c: error: SERIAL_RDWR undeclared (first use in this function)

  959714 - Assigned to Embedded Gentoo Team
• sci-libs/gmsh CMake Error at CMakeLists.txt:754 (message): Could not find GLU: disabling OpenGL support

  960011 - Assigned to Matthias Maier
• sci-libs/gdal-3.9.3-r1 - failed to rebuild after system update - error: too many arguments to function

  960382 - Assigned to Sci-geo Project
• sci-libs/hipBLASLt: build causes out-of-memory even with 64GB RAM and -j1

  960513 - Assigned to Sv. Lockal
• sci-libs/gdal-3.9.3-r1 - [gcc-16] QA Notice: Problems with installed bash completions were found:

  960677 - Assigned to Sci-geo Project
• sci-libs/gdal-3.11.3 - respect PREFIX in java-pkg_doso

  962216 - Assigned to Sci-geo Project
• sci-libs/rocSOLVER-6.4.3 fails to compile with rocBLAS-9999

  962432 - Assigned to Sv. Lockal
• sci-libs/vtk-9.4.2-r1 fails with libfmt-12

  963035 - Assigned to Paul Zander
• sci-libs/opencascade-7.8.1-r1: metadata.xml typo

  963404 - Assigned to Paul Zander
• sci-libs/gmsh-4.14.0 - QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4

  963573 - Assigned to Matthias Maier
• sci-libs/parmetis-4.0.3_p20230326-r1 - [jdk25] [ffmpeg8] QA Notice: Compatibility with CMake < 3.5 has been removed from CMake 4,

  963577 - Assigned to Gentoo Science Related Packages
• sci-libs/libqalculate-5.7.0: doxygen: undefined symbol

  963582 - Assigned to Christopher Fore
• sci-libs/gmsh-4.14.1 - fatal error: ap.h: No such file or directory

  963599 - Assigned to Matthias Maier
• sci-libs/flexiblas-3.4.82-r4: fails tests with -O2 -flto -fno-semantic-interposition

  963667 - Assigned to Michał Górny
• sci-libs/indilib-2.1.5.1 - [portage-9999] QA Notice: unstripped LTO libs

  963784 - Assigned to Gentoo KDE team
• sci-libs/openblas-0.3.30-r3 - failed to set dynamic section sizes: bad value

  964049 - Assigned to Michał Górny
• sci-libs/bliss-0.77-r1 - [boost-1.89] [gcc-16] QA Notice: Compatibility with CMake < 3.10 will be removed in a future release.

  964638 - Assigned to Gentoo Science Related Packages
• sci-libs/lmfit-9.0-r1 - [ffmpeg8] [jdk25] [meson] QA Notice: Compatibility with CMake < 3.10 will be removed in a future release.

  964777 - Assigned to Gentoo Science Related Packages
• sci-libs/vtk-9.4.2-r2 fails to build with media-video/ffmpeg-8.0

  964986 - Assigned to Paul Zander

Stabilization Bug Reports

• sci-libs/roc{FFT,RAND,SPARSE,Thrust,PRIM}-4.0.0-r1 please stabilize

  793914 - Assigned to Gentoo Science Related Packages
• sci-libs/atlas-3.11.41: stablereq

  945564 - Assigned to Gentoo Science Related Packages
• media-gfx/wings-2.4, sci-libs/libigl-2.5.0: stablereq

  950887 - Assigned to 3D Printing Team
• sci-libs/cfitsio-4.6.3 stabilisation (was: sci-libs/cfitsio-4.6.0 - [cmake-4] -- Configuring incomplete, errors occurred!)

  951715 - Assigned to Gentoo Astronomy project

Keywording Bug Reports

• media-gfx/freecad (and dependencies): arm64 keywording

  881653 - Assigned to Paul Zander
• sci-libs/blis-1.0 arm(64) keyword request

  933473 - Assigned to Michał Górny
• sci-libs/libaec: Add ~ppc64 keyword

  937755 - Assigned to Gentoo Science Related Packages
• sci-libs/gdal-3.11.3: rekeyword request

  960964 - Assigned to Sci-geo Project
• sci-libs/flexiblas: keyword

  962787 - Assigned to Michał Górny
• sci-libs/blas-lapack-aux-wrapper: keywording

  963611 - Assigned to Michał Górny