sci-biology – Gentoo Packages

Outdated Packages

sci-biology/abyss-2.3.10
Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
sci-biology/bioperl-1.7.8
Perl tools for bioinformatics - Core modules
sci-biology/bioperl-network-1.6.902
Perl tools for bioinformatics - Analysis of protein-protein interaction networks
sci-biology/bioperl-run-1.7.3
Perl wrapper modules for key bioinformatics applications
sci-biology/blat-37
The BLAST-Like Alignment Tool, a fast genomic sequence aligner
sci-biology/bowtie-2.5.4
Popular short read aligner for Next-generation sequencing data
sci-biology/bwa-0.7.19
Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner
sci-biology/cd-hit-4.8.1
Clustering Database at High Identity with Tolerance
sci-biology/clustalw-mpi-0.15
An MPI implemention of the ClustalW general purpose multiple alignment algorithm
sci-biology/exonerate-2.4.0
Generic tool for pairwise sequence comparison
sci-biology/fastx_toolkit-0.0.14.6
Tools for Short Read FASTA/FASTQ file processing
sci-biology/foldingathome-8.4.9
Folding@Home is a distributed computing project for protein folding
sci-biology/gmap-2024-11-20
A Genomic Mapping and Alignment Program for mRNA and EST Sequences
sci-biology/infernal-1.1.5
Inference of RNA alignments
sci-biology/kalign-3.4.0
Global and progressive multiple sequence alignment
sci-biology/kallisto-0.51.1
Near-optimal RNA-Seq quantification
sci-biology/libgtextutils-0.7.2
Gordon Text utils Library
sci-biology/mafft-7.526
Multiple sequence alignments using a variety of algorithms
sci-biology/mcl-22-282
A Markov Cluster Algorithm implementation
sci-biology/mothur-1.48.3
A suite of algorithms for ecological bioinformatics
sci-biology/mrbayes-3.2.7a
Bayesian Inference of Phylogeny
sci-biology/mummer-4.0.1
A rapid whole genome aligner
sci-biology/muscle-5.3
Multiple sequence comparison by log-expectation
sci-biology/paml-4.10.9
Phylogenetic Analysis by Maximum Likelihood
sci-biology/samtools-1.22.1
Utilities for analysing and manipulating the SAM/BAM alignment formats
sci-biology/seaview-5.1
A graphical multiple sequence alignment editor
sci-biology/seqan-3.3.0
C++ Sequence Analysis Library
sci-biology/sim4-20121010
A program to align cDNA and genomic DNA
sci-biology/STAR-2.7.11b
STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays
sci-biology/t-coffee-12.00
A multiple sequence alignment package
sci-biology/trf-4.09.1
Tandem Repeats Finder
sci-biology/trnascan-se-2.0.12
tRNA detection in large-scale genome sequences
sci-biology/ucsc-genome-browser-485
The UCSC genome browser suite, also known as Jim Kent's library and GoldenPath
sci-biology/vcftools-0.1.17
Tools for working with VCF (Variant Call Format) files
sci-biology/wise-2.4.1
Intelligent algorithms for DNA searches

Description

Based on the data of repology.org and release-monitoring.org, there might be a new version available for these packages.

Please don't solely rely on this information, as the data from repology and release-monitoring might not be accurate.