Gentoo Packages
Get Gentoo!
gentoo.org sites
gentoo.org Wiki Bugs Forums Packages
Planet Archives Sources
Infra Status
  • Home
  • Packages
  • Maintainers
  • USE flags
  • Architectures
  • About

sci-biology/
abyss

Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler

https://www.bcgsc.ca/resources/software/abyss/

Overview Dependencies QA report Pull requests 0 Bugs 4 Security 0 Changelog

Bug Reports

  • sci-biology/abyss-2.3.4 - [gcc-15] Timer.cpp: error: m_start was not declared in this scope
    939044 - Assigned to Gentoo musl team
  • sci-biology/abyss-2.3.4 calls commands that do not exist (MUSL-CLANG-SYSTEM): :
    898112 - Assigned to Gentoo Science Biology related packages
  • sci-biology/abyss-2.3.4 fails to compile (MUSL): Timer.h:17:17: error: clock_t does not name a type
    873022 - Assigned to Gentoo Science Biology related packages
  • sci-biology/abyss-2.3.4 : Uncompress.cpp: error: redefinition of FILE* fopen(const char*, const char*)
    715718 - Assigned to Gentoo musl team

Description

Gentoo Bugzilla is where we track bugs of Gentoo and its packages; you are welcome to report, confirm and resolve bugs:
  • File a new Bug
  • Confirm a bug
  • Participate in our monthly Bugday

Shortcuts

  • Packages Bugs (4)
  • Stabilization Bugs (0)
  • Keywording Bugs (0)
© 2001–2025 Gentoo Authors
Gentoo is a trademark of the Gentoo Foundation, Inc. and of Förderverein Gentoo e.V. The contents of this document, unless otherwise expressly stated, are licensed under the CC-BY-SA-4.0 license. The Gentoo Name and Logo Usage Guidelines apply.
Contact
v1.0.3