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sci-biology/
bcftools

Utilities for variant calling and manipulating VCF and BCF files

http://www.htslib.org

Pkgcheck Warnings

  • All Versions
    • UnstableOnly
      for arches: [ amd64, x86 ], all versions are unstable: [ 1.19, 1.20, 1.21 ]
  • 1.21
    • 1.20
      • PythonCompatUpdate
        PYTHON_COMPAT update available: python3_13
      • RedundantVersion
        slot(0) keywords are overshadowed by version: 1.21
      • RequiredUseDefaults
        profile: 'default/linux/amd64/23.0' (60 total) failed REQUIRED_USE: exactly-one-of ( python_single_target_python3_11 python_single_target_python3_12 )
    • 1.19
      • PythonCompatUpdate
        PYTHON_COMPAT update available: python3_13
      • RedundantVersion
        slot(0) keywords are overshadowed by versions: 1.20, 1.21
      • RequiredUseDefaults
        profile: 'default/linux/amd64/23.0' (60 total) failed REQUIRED_USE: exactly-one-of ( python_single_target_python3_11 python_single_target_python3_12 )

    Pkgcheck is used regularly to generate QA reports. Pkgcheck is a pkgcore-based QA utility for ebuild repos.